PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Han006423
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Heliantheae alliance; Heliantheae; Helianthus
Family ERF
Protein Properties Length: 241aa    MW: 25645.4 Da    PI: 10.3756
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PUT-169a-Helianthus_annuus-59147PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP261.51.9e-192878155
        AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
               ++y+GVr ++ +gr++AeIrdp   gk+ r++lg+f+ta eAa+a++ a+++++g
  Han006423 28 TRYRGVRKRP-WGRYAAEIRDP---GKKSRVWLGTFDTAVEAARAYDTAAREFRG 78
               68********.**********8...557************************997 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008471.5E-122878IPR001471AP2/ERF domain
CDDcd000181.43E-292886No hitNo description
Gene3DG3DSA:3.30.730.107.4E-322987IPR001471AP2/ERF domain
SuperFamilySSF541711.18E-212987IPR016177DNA-binding domain
SMARTSM003804.5E-362992IPR001471AP2/ERF domain
PROSITE profilePS5103223.5912986IPR001471AP2/ERF domain
PRINTSPR003671.3E-103041IPR001471AP2/ERF domain
PRINTSPR003671.3E-105268IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 241 aa     Download sequence    Send to blast
XFSIMVPRGK PDVTATATAA AANGASETRY RGVRKRPWGR YAAEIRDPGK KSRVWLGTFD  60
TAVEAARAYD TAAREFRGDK AKTNFPSPNE FCLPNTAVTV AGKRIVTKSR SGESSTVESS  120
SNSAAPNAPI TVVPVPVPPA LDLRLAQSHA RYGFPMAHSL FLFHSQIDHI ANRGNRLKSD  180
GSKPNLTIGT GNGNANGSQS DSDSSSVGNF SNPVSSDRPK PEKPFALDLD LNFPPAEVAG  240
M
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3gcc_A4e-193086663ATERF1
2gcc_A4e-193086663ATERF1
1gcc_A5e-193086360ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
SwissprotO803401e-37ERF78_ARATH; Ethylene-responsive transcription factor 4
TrEMBLA0A103YJW32e-74A0A103YJW3_CYNCS; AP2/ERF domain-containing protein
STRINGscaffold_301765.15e-38(Arabidopsis lyrata)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G15210.12e-35ethylene responsive element binding factor 4